miRBase entry: dvi-mir-974-1

Stem-loop dvi-mir-974-1


Accession
MI0029290
Description
Drosophila virilis dvi-mir-974-1 precursor miRNA
Gene family
MIPF0002083; mir-974


Sequence

augaggccaauuucucuGAGCGAGCAAUGAAGUAAUAUUuguucgaccugauauaacaaAUAAGACUUUUUUGGUCGUUAGcaggaauuguccau
....((.((((((((((((.(((.(((.(((((..((((((((...........))))))))..))))).))).))))))).)))))))).))..

Structure
auga  c        -    G   G   U     AA        cgac 
    gg caauuucu cuGA CGA CAA GAAGU  UAUUuguu    c
    || |||||||| |||| ||| ||| |||||  ||||||||    u
    cc guuaagga GAUU GCU GUU UUUCA  AUAaacaa    g
--ua  u        c    -   G   U     GA        uaua 


Annotation confidence Not enough data
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Genome context
scaffold_13042: 917735-917829 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from dvi-mir-974-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-974-1-5p

Accession MIMAT0035644
Description Drosophila virilis dvi-miR-974-1-5p mature miRNA
Sequence 18 - GAGCGAGCAAUGAAGUAAUAUU - 39
Evidence experimental
Illumina [1-2]

Mature dvi-miR-974-1-3p

Accession MIMAT0037536
Description Drosophila virilis dvi-miR-974-1-3p mature miRNA
Sequence 60 - AUAAGACUUUUUUGGUCGUUAG - 81
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250