Stem-loop bra-MIR9552b

Accession

MI0029297

Description

Brassica rapa bra-MIR9552b precursor miRNA

Gene family

MIPF0002123; MIR9552

Literature search

1 open access papers mention bra-MIR9552b
(1 sentences)

Sequence

uguuguugucaguagaCUAUCGGUCUACUUGGUCAGCgcuagcuucuuccucaccggacaggcuaaacuucugcagcuucuccacuagauuagucuguccggugaugaagaagcuagcgcUGACCGAGUAGACCGAUAGUCugcugacaacaacagccaacuucuuaaugucuucgauugcagagucgaagauguagucgaguguuucuuucacuugguauacugucucguaugggcucuguuucuuga
.((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((.((..((.((...)).))..)).)))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))((((.........((((((((((((....))))))))))))..(((((((.......)))))))(((((......)))))))))...........

Structure

----------------------------------------------------------------------------------------------u                                                c                a  uc  c  c 
                                                                                               guuguugucaguagaCUAUCGGUCUACUUGGUCAGCgcuagcuucuuc ucaccggacaggcuaa cu  ug ag  
                                                                                               |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  || || u
                                                                                               caacaacagucguCUGAUAGCCAGAUGAGCCAGUcgcgaucgaagaag aguggccugucugauu ga  ac uc  
aguucuuugucucggguaugcucugucauaugguucacuuucuuugugagcugauguagaagcugagacguuagcuucuguaauucuucaaccga                                                u                a  uc  c  u 

Annotation confidence Not enough data

Genome context

chrA8: 9143815-9144063 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bra-MIR9552b

Mature bra-miR9552b-5p

• Accession: MIMAT0035655
• Description: Brassica rapa bra-miR9552b-5p mature miRNA
• Sequence: 17 - CUAUCGGUCUACUUGGUCAGC - 37
• Evidence: experimental ; Illumina [1]

Mature bra-miR9552b-3p

• Accession: MIMAT0035656
• Description: Brassica rapa bra-miR9552b-3p mature miRNA
• Sequence: 121 - UGACCGAGUAGACCGAUAGUC - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146