miRBase entry: bra-MIR9557

Stem-loop bra-MIR9557


Accession
MI0029303
Description
Brassica rapa bra-MIR9557 precursor miRNA

Literature search
1 open access papers mention bra-MIR9557
(1 sentences)

Sequence

gccgcuuuauucuucacuuacgcaugcugucuuuacaguucacacugaUUUUGCGUUUCAACUCGGUCCucauuucuuuauaacgaaguggaggaacaaaaagauguuuucagaagaacauugaagaggaagagaaugaaagcugcaaguuaaaagaaaugaggGCUGAGUUGGAACGCAAAAUCuuu
.........................(((((....))))).......(((((((((((((((((((((((((((((((((.((((...((((...............(((((((.......)))))))...............))))..)))))))))))))))))))))))))))))))))))))...

Structure
gccgcuuuauucuucacuuacgcaugcugucuuuacaguucacacu                                 a    gaa    aggaacaaaaagaug       aa 
                                              gaUUUUGCGUUUCAACUCGGUCCucauuucuuu uaac   gugg               uuuucag  g
                                              ||||||||||||||||||||||||||||||||| ||||   ||||               |||||||  a
                                              CUAAAACGCAAGGUUGAGUCGggaguaaagaaa auug   cguc               agaaguu  a
-------------------------------------------uuu                                 -    -aa    gaaaguaagagaagg       ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrA7: 1046108-1046295 [-]

Database links

Mature bra-miR9557-5p

Accession MIMAT0035667
Description Brassica rapa bra-miR9557-5p mature miRNA
Sequence 49 - UUUUGCGUUUCAACUCGGUCC - 69
Evidence experimental
Illumina [1]

Mature bra-miR9557-3p

Accession MIMAT0035668
Description Brassica rapa bra-miR9557-3p mature miRNA
Sequence 165 - GCUGAGUUGGAACGCAAAAUC - 185
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146