miRBase entry: bra-MIR9559

Stem-loop bra-MIR9559


Accession
MI0029305
Description
Brassica rapa bra-MIR9559 precursor miRNA

Literature search
1 open access papers mention bra-MIR9559
(1 sentences)

Sequence

gaaucuuucugucauuaggUUUGGAUUUUGGUCAUUGUUGggaaagguucuugaacaaugaacuaaauccaACAAUGAACGAAAUCCAAAUCuaauuacaaaaagauug
.(((((((.(((.(((((((((((((((((.(((((((((((...(((((.........)))))...))))))))))).))))))))))))))))).))).))))))).

Structure
g       c   c                 G           aaa     uug 
 aaucuuu ugu auuaggUUUGGAUUUUG UCAUUGUUGgg   gguuc   a
 ||||||| ||| ||||||||||||||||| |||||||||||   |||||   a
 uuagaaa aca uaauCUAAACCUAAAGC AGUAACAaccu   ucaag   c
g       a   u                 A           aaa     uaa 


Annotation confidence Not enough data
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Genome context
chrA4: 346426-346534 [+]

Database links

Mature bra-miR9559-5p

Accession MIMAT0035671
Description Brassica rapa bra-miR9559-5p mature miRNA
Sequence 20 - UUUGGAUUUUGGUCAUUGUUG - 40
Evidence experimental
Illumina [1]

Mature bra-miR9559-3p

Accession MIMAT0035672
Description Brassica rapa bra-miR9559-3p mature miRNA
Sequence 72 - ACAAUGAACGAAAUCCAAAUC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146