miRBase entry: bra-MIR9562

Stem-loop bra-MIR9562


Accession
MI0029310
Description
Brassica rapa bra-MIR9562 precursor miRNA


Sequence

agugucuuaaaacauuuccaauuccacuguaaaauggaguggACUAUGCAAUUGUGAACAAACaaaaaauucauuacuauauaugcaguaauguuuuuauguUUAUUCACAACUGCAUAAUUCacucuauuuugcaguagauuuugcag
.((((......))))...(((.((.((((((((((((((((((.((((((.(((((((.(((((.((((..(((((((........))))))).)))).))))).))))))).)))))).)))))))))))))))))).))..)))...

Structure
agugucuuaaaacauuuc   -u  c                  C      A       C     a    uu       aua 
                  caa  uc acuguaaaauggaguggA UAUGCA UUGUGAA AAACa aaaa  cauuacu   u
                  |||  || |||||||||||||||||| |||||| ||||||| ||||| ||||  |||||||    
                  guu  ag ugacguuuuaucucaCUU AUACGU AACACUU UUugu uuuu  guaauga   a
---------------gac   uu  a                  A      C       A     a    -u       cgu 


Annotation confidence Not enough data
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Genome context
chrA2: 18896191-18896339 [+]

Database links

Mature bra-miR9562-5p

Accession MIMAT0035681
Description Brassica rapa bra-miR9562-5p mature miRNA
Sequence 43 - ACUAUGCAAUUGUGAACAAAC - 63
Evidence experimental
Illumina [1]

Mature bra-miR9562-3p

Accession MIMAT0035682
Description Brassica rapa bra-miR9562-3p mature miRNA
Sequence 103 - UUAUUCACAACUGCAUAAUUC - 123
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146