miRBase entry: bra-MIR9564

Stem-loop bra-MIR9564


Accession
MI0029313
Description
Brassica rapa bra-MIR9564 precursor miRNA


Sequence

uuuccgaaaacauuucggaaggauaaaacuuguucucccaaaaaaaccgcugaaaaaccccuacguuaaucgcggaaaaaggaaacacaACAAAACGAUUACACAGCUCGGUCgcuacguagcgacCGAGCUGUGUAAUCGUUUUGUUguguuuccuuuuuccgcgauuaacguagggguuuuucagcgguuuuuuugggagaacaaguuuuauccuuccgaaauguuuucgg
...(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
uuu                                                                                                                 a 
   ccgaaaacauuucggaaggauaaaacuuguucucccaaaaaaaccgcugaaaaaccccuacguuaaucgcggaaaaaggaaacacaACAAAACGAUUACACAGCUCGGUCgcu c
   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
   ggcuuuuguaaagccuuccuauuuugaacaagaggguuuuuuuggcgacuuuuuggggaugcaauuagcgccuuuuuccuuugugUUGUUUUGCUAAUGUGUCGAGCcagcga g
---                                                                                                                 u 


Annotation confidence Not enough data
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Genome context
chrA1: 24271248-24271480 [+]

Database links

Mature bra-miR9564-5p

Accession MIMAT0035687
Description Brassica rapa bra-miR9564-5p mature miRNA
Sequence 90 - ACAAAACGAUUACACAGCUCGGUC - 113
Evidence experimental
Illumina [1]

Mature bra-miR9564-3p

Accession MIMAT0035688
Description Brassica rapa bra-miR9564-3p mature miRNA
Sequence 127 - CGAGCUGUGUAAUCGUUUUGUU - 148
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146