Stem-loop bra-MIR9566

Accession

MI0029315

Description

Brassica rapa bra-MIR9566 precursor miRNA

Sequence

ucuguaaucucuugguauguauucgaauuuauaccgaaguaggggaccagcucuaucaaucaaaaaccaaacuucaUUGUUGACAAAUACUUAGGCUCucucuagguaaaagaaucaucauaucuuuuaguguuaaagacagcuacuacaaacuaaaagauaugaugauucuuuuaccuagagaGAGCCUAAGUAUUUGUCAACAAUGaaguuugguu
...........((((((((..........)))))))).((((((......))))))........(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((....................)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

ucuguaaucucuugguauguauucgaauuuauaccgaaguaggggaccagcucuaucaaucaaa                                                                   guuaaagac 
                                                                aaccaaacuucaUUGUUGACAAAUACUUAGGCUCucucuagguaaaagaaucaucauaucuuuuagu         a
                                                                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
                                                                uugguuugaaGUAACAACUGUUUAUGAAUCCGAGagagauccauuuucuuaguaguauagaaaauca         g
----------------------------------------------------------------                                                                   aacaucauc 

Annotation confidence Not enough data

Genome context

chrA1: 4945796-4946013 [-]

Mature bra-miR9566-5p

• Accession: MIMAT0035691
• Description: Brassica rapa bra-miR9566-5p mature miRNA
• Sequence: 77 - UUGUUGACAAAUACUUAGGCUC - 98
• Evidence: experimental ; Illumina [1]

Mature bra-miR9566-3p

• Accession: MIMAT0035692
• Description: Brassica rapa bra-miR9566-3p mature miRNA
• Sequence: 185 - GAGCCUAAGUAUUUGUCAACAAUG - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146