Stem-loop bra-MIR9563b

Accession

MI0029317

Description

Brassica rapa bra-MIR9563b precursor miRNA

Gene family

MIPF0001941; MIR9563

Sequence

aaugaauagggacccaaaugaauauuaauuugaagaaugguauuaagaacaugauuaauggggaguucuuaaggugagguucuuaacaggauauAAGAACUCGUCUCUUAACUUUUAAcuaaaaaaacuaacaaccaacucuuaaauaagguauuuaagagccgguuuuuagcuuuuuuaguuaaAAAUUAAGAGAUGAAUUCUUACaucccacuaagaacucuacccuaagaauucc
..............(((((........)))))........((((((........)))))).((((((((((.((((.((((((((...((((.((((((.(((((((((((.((((((((((((((.((((.((((..((((((((((...))))))))))..)))).)))).)))))))))))))).))))))))))).)))))).))))...)))))))).)))).))))))))))

Structure

aaugaauagggacccaaaugaauauuaauuugaagaaugguauuaagaacaugauuaaugg          a    a        aca    a      C           C              a    c    aa          a 
                                                             ggaguucuua ggug gguucuua   ggau uAAGAA UCGUCUCUUAA UUUUAAcuaaaaaa cuaa aacc  cucuuaaaua  
                                                             |||||||||| |||| ||||||||   |||| |||||| ||||||||||| |||||||||||||| |||| ||||  |||||||||| g
                                                             ccuuaagaau ccau ucaagaau   ccua AUUCUU AGUAGAGAAUU AAaauugauuuuuu gauu uugg  gagaauuuau  
-------------------------------------------------------------          c    c        cac    C      A           A              c    u    cc          g 

Annotation confidence Not enough data

Genome context

chrA9: 27203625-27203862 [+]

Mature bra-miR9563b-5p

• Accession: MIMAT0035695
• Description: Brassica rapa bra-miR9563b-5p mature miRNA
• Sequence: 95 - AAGAACUCGUCUCUUAACUUUUAA - 118
• Evidence: experimental ; Illumina [1]

Mature bra-miR9563b-3p

• Accession: MIMAT0035696
• Description: Brassica rapa bra-miR9563b-3p mature miRNA
• Sequence: 186 - AAAUUAAGAGAUGAAUUCUUAC - 207
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146