miRBase entry: bra-MIR9568

Stem-loop bra-MIR9568


Accession
MI0029318
Description
Brassica rapa bra-MIR9568 precursor miRNA


Sequence

uucucuuagagcaugauuaaUGCGGAUAUCUUAGGAUGAGGUucuuaguguaauauaaaaaacauuuauuacuuaaaagcuuaaagaaucuuuuauaguacguuaaaaaccUCAUCGUAAGAGAUCUGCAUUaaucauauucuuagaucc
...(((.((((.(((((((((((((((.(((((.(((((((((.((((((((.(((((((....((((.............)))).....))))))).)))))))).))))))))).))))).))))))))))))))).)))).)))...

Structure
uuc   u    c               A     G         c        a       -aaca    uuacu 
   ucu agag augauuaaUGCGGAU UCUUA GAUGAGGUu uuagugua uauaaaa     uuua     u
   ||| |||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||     ||||     a
   aga ucuu uacuaaUUACGUCUA AGAAU CUACUccaa aauugcau auauuuu     aaau     a
ccu   u    a               G     G         a        g       cuaag    ucgaa 


Annotation confidence Not enough data
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Genome context
chrA3: 14094126-14094275 [+]

Database links

Mature bra-miR9568-5p

Accession MIMAT0035697
Description Brassica rapa bra-miR9568-5p mature miRNA
Sequence 21 - UGCGGAUAUCUUAGGAUGAGGU - 42
Evidence experimental
Illumina [1]

Mature bra-miR9568-3p

Accession MIMAT0035698
Description Brassica rapa bra-miR9568-3p mature miRNA
Sequence 112 - UCAUCGUAAGAGAUCUGCAUU - 132
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146