Stem-loop bra-MIR158

Accession

MI0029320

Description

Brassica rapa bra-MIR158 precursor miRNA

Gene family

MIPF0000294; MIR158

Literature search

4 open access papers mention bra-MIR158
(14 sentences)

Sequence

auagcacguuauaucuguucuuCUUUGUCUAUCGUUUGGAAAAGauugaugacgcuaucuacacuUUUCCAAAUGUAGACAAAGCAaaaccgugaugacgucguaga
...(((((((((..(.(((...(((((((((.((((((((((((...((((....))))....)))))))))))))))))))))...))).)..))))))).))...

Structure

aua  -       au u   cuu         U            -auu    a 
   gc acguuau  c guu   CUUUGUCUA CGUUUGGAAAAG    gaug c
   || |||||||  | |||   ||||||||| ||||||||||||    ||||  
   ug ugcagua  g caa   GAAACAGAU GUAAACCUUUuc    cuau g
aga  c       gu c   aAC         -            acau    c 

Annotation confidence Not enough data

Genome context

chrA8: 3271798-3271904 [+]

Mature bra-miR158-5p

• Accession: MIMAT0035701
• Description: Brassica rapa bra-miR158-5p mature miRNA
• Sequence: 23 - CUUUGUCUAUCGUUUGGAAAAG - 44
• Evidence: experimental ; Illumina [1]

Mature bra-miR158-3p

• Accession: MIMAT0035702
• Description: Brassica rapa bra-miR158-3p mature miRNA
• Sequence: 66 - UUUCCAAAUGUAGACAAAGCA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146