Stem-loop sequence gga-mir-19b-2

Accession

MI0029332 (change log)

Description

Gallus gallus miR-19b-2 stem-loop

Literature search

3 open access papers mention gga-mir-19b-2
(10 sentences)

Stem-loop

     ug u                -  -      ucc    uugc 
5' gc  c cacagucaguuuugca gg uuugca   cagc    u
   ||  | |||||||||||||||| || ||||||   ||||    a
3' ug  g gugucagucaaaacgu cc aaacgu   gucg    a
     gu -                a  u      ---    uuaa 

Deep sequencing

13433 reads, 220 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 3994707-3994789 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-19b-2

• gga-mir-106: chr4: 3995151-3995231 [-]
• gga-mir-18b: chr4: 3995020-3995103 [-]
• gga-mir-20b: chr4: 3994839-3994923 [-]
• gga-mir-19b-2: chr4: 3994707-3994789 [-]
• gga-mir-92-2: chr4: 3994560-3994640 [-]
• gga-mir-363: chr4: 3994409-3994515 [-]

Database links

• miRBase Tracker:MI0029332

Mature sequence gga-miR-19b-3p

• Accession: MIMAT0001110
• Sequence: 51 - ugugcaaauccaugcaaaacuga - 73
• Deep sequencing: 26848 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).