Stem-loop sequence gga-mir-33-2

Accession

MI0029334 (change log)

Description

Gallus gallus miR-33-2 stem-loop

Literature search

8 open access papers mention gga-mir-33-2
(120 sentences)

Stem-loop

   -c         g   g     u    uu         gug  ag 
5'   ggcccucgc ggg ugcau guag  gcauugcau   uc  a
     ||||||||| ||| ||||| ||||  |||||||||   ||   
3'   cugggggcg ccc acgua cguc  cguaacgug   gg  c
   cc         g   g     c    cc         --a  gu 

Deep sequencing

37677 reads, 260 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr14: 4937943-4938029 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-33-2

• gga-mir-1682: chr14: 4947156-4947228 [+]
• gga-mir-33-2: chr14: 4937943-4938029 [-]

Database links

• miRBase Tracker:MI0029334

Mature sequence gga-miR-33-2-5p

• Accession: MIMAT0037539
• Sequence: 15 - gugcauuguaguugcauugcau - 36
• Deep sequencing: 24999 reads, 5 experiments
• Evidence: not experimental

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).