miRBase entry: gga-mir-33-2

Stem-loop gga-mir-33-2


Accession
MI0029334
Description
Gallus gallus gga-mir-33-2 precursor miRNA

Literature search
8 open access papers mention gga-mir-33-2
(121 sentences)

Sequence

24485 reads, 535 reads per million, 5 experiments
cggcccucgcggggGUGCAUUGUAGUUGCAUUGCAUgugucagacugggagugcaaugccccugccaugcagcccggcggggguccc
.(((((((((.(((.(((((.((((..(((((((((...(((...)))..)))))))))..)))).))))).))).)))))))))..

Structure
-c         g   G     U    UU         gug   g 
  ggcccucgc ggg UGCAU GUAG  GCAUUGCAU   uca  
  ||||||||| ||| ||||| ||||  |||||||||   ||| a
  cugggggcg ccc acgua cguc  cguaacgug   ggu  
cc         g   g     c    cc         -ag   c 


Annotation confidence Not enough data
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Genome context
chr14: 4937943-4938029 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-33-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-33-2-5p

Accession MIMAT0037539
Description Gallus gallus gga-miR-33-2-5p mature miRNA
Sequence 15 - GUGCAUUGUAGUUGCAUUGCAU - 36
Evidence not_experimental

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196