miRBase entry: aca-mir-181c

Stem-loop aca-mir-181c


Accession
MI0029355
Description
Anolis carolinensis aca-mir-181c precursor miRNA


Sequence

aaagucacaaucAACAUUCAUUCUGUCGGUGGGUugugaugcuggaggagaaccucacugaucagugaaugcaacuguggcugga
..(((((((.....((((((((..(((((((((((.(...........).)))).))))))).))))))))....)))))))...

Structure
-aa       aucAA        CU       -    g gaug 
   agucaca     CAUUCAUU  GUCGGUG GGUu u    c
   |||||||     ||||||||  ||||||| |||| |    u
   ucggugu     guaaguga  uagucac ccaa a    g
agg       -caac        -c       u    g ggag 


Annotation confidence Not enough data
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Genome context
chr2: 77114294-77114378 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-181c-5p

Accession MIMAT0037569
Description Anolis carolinensis aca-miR-181c-5p mature miRNA
Sequence 13 - AACAUUCAUUCUGUCGGUGGGU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196