miRBase entry: aca-mir-5396b

Stem-loop aca-mir-5396b


Accession
MI0029362
Description
Anolis carolinensis aca-mir-5396b precursor miRNA


Sequence

gcccagaauggggcauCCACACAACCAGCAAGAAGGAAauaagauuaaucccuuUCUUCUUGCUGUUUGUGCAGGUgccucauccugaca
...(((.((((((((((..(((((.(((((((((((((..............))))))))))))).)))))..)))))))))).)))...

Structure
gcc   a          CA     C             auaaga 
   cag auggggcauC  CACAA CAGCAAGAAGGAA      u
   ||| ||||||||||  ||||| |||||||||||||       
   guc uacuccgUGG  GUGUU GUCGUUCUUCUuu      u
aca   c          AC     U             cccuaa 


Annotation confidence Not enough data
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Genome context
chr1: 213792650-213792739 [-]

Database links

Mature aca-miR-5396b-5p

Accession MIMAT0037580
Description Anolis carolinensis aca-miR-5396b-5p mature miRNA
Sequence 17 - CCACACAACCAGCAAGAAGGAA - 38
Evidence experimental
Illumina [1]

Mature aca-miR-5396b-3p

Accession MIMAT0037581
Description Anolis carolinensis aca-miR-5396b-3p mature miRNA
Sequence 55 - UCUUCUUGCUGUUUGUGCAGGU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196