miRBase entry: cpi-let-7a-1

Stem-loop cpi-let-7a-1

Accession

MI0029371

Description

Chrysemys picta cpi-let-7a-1 precursor miRNA

Sequence

ccugcacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacaacugggagauaaCUAUACAAUCUACUGUCUUUccuaaagcagcaga
.((((.((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))..)))).

Structure

c    -a  g     U                     uuagg   aua    c 
 cugc  cu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca a
 ||||  || ||||| |||||||||||||||||||||     |||   ||||  
 gacg  ga auccU UUCUGUCAUCUAACAUAUCaa     uag   gggu a
a    ac  a     -                     -----   --a    c

Annotation confidence Not enough data

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Genome context

KK088242.1: 1330114-1330212 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpi-let-7a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-let-7a-5p

Accession	MIMAT0037594
Description	Chrysemys picta cpi-let-7a-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUAGUU - 36
Evidence	experimental Illumina [1]

Mature cpi-let-7a-3p

Accession	MIMAT0037595
Description	Chrysemys picta cpi-let-7a-3p mature miRNA
Sequence	66 - CUAUACAAUCUACUGUCUUU - 85
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196