miRBase entry: cpi-let-7a-4

Stem-loop cpi-let-7a-4


Accession
MI0029374
Description
Chrysemys picta cpi-let-7a-4 precursor miRNA


Sequence

uggaggUGAGGUAGUAGGUUGUAUAGUUuggugggagggauuucaucccauuucaggugauaaCUAUACAGUCUAUUGCCUUCCuuaaag
..((((.(((((((((((((((((((((...((((((((((...))))).)))))......)))))))))))))))))))))))))....

Structure
--ug    U                     ---ugg     -     u 
    gagg GAGGUAGUAGGUUGUAUAGUU      uggga gggau  
    |||| |||||||||||||||||||||      ||||| ||||| u
    uuCC UUCCGUUAUCUGACAUAUCaa      acuuu cccua  
gaaa    -                     uagugg     a     c 


Annotation confidence Not enough data
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Genome context
chr4: 2386302-2386391 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-let-7a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-let-7a-5p

Accession MIMAT0037594
Description Chrysemys picta cpi-let-7a-5p mature miRNA
Sequence 7 - UGAGGUAGUAGGUUGUAUAGUU - 28
Evidence experimental
Illumina [1]

Mature cpi-let-7a-4-3p

Accession MIMAT0037597
Description Chrysemys picta cpi-let-7a-4-3p mature miRNA
Sequence 64 - CUAUACAGUCUAUUGCCUUCC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196