miRBase entry: cpi-let-7d

Stem-loop cpi-let-7d


Accession
MI0029378
Description
Chrysemys picta cpi-let-7d precursor miRNA


Sequence

uaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagagauuuugcucacaaggaguuaaCUAUACAACCUGCUGCCUUUCUuagggcu
(((((.((((((((((((((.((((((...(((((((...)))))))..........)))))).))))))))))))))))))).....

Structure
-----     A              C      -------uua       g 
     uagga GAGGUAGUAGGUUG AUAGUU          gggcaga  
     ||||| |||||||||||||| ||||||          ||||||| a
     auUCU UUCCGUCGUCCAAC UAUCaa          cucguuu  
ucggg     -              A      uugaggaaca       u 


Annotation confidence Not enough data
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Genome context
KK088242.1: 1331717-1331804 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-let-7d-5p

Accession MIMAT0037602
Description Chrysemys picta cpi-let-7d-5p mature miRNA
Sequence 6 - AGAGGUAGUAGGUUGCAUAGUU - 27
Evidence experimental
Illumina [1]

Mature cpi-let-7d-3p

Accession MIMAT0037603
Description Chrysemys picta cpi-let-7d-3p mature miRNA
Sequence 60 - CUAUACAACCUGCUGCCUUUCU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196