miRBase entry: cpi-mir-1b

Stem-loop cpi-mir-1b


Accession
MI0029386
Description
Chrysemys picta cpi-mir-1b precursor miRNA


Sequence

agccccucccucccaacccuaCAUACUUCUUCAUAUGCCCAUAgggagucagccggcguuaUGGAAUGUUAAGAAGUAUGUAUccuugggcuggggucc
.(((((.....(((((...((((((((((((.((((..((((((...(((....))).)))))).)))).))))))))))))...)))))..)))))..

Structure
-a     ucccu     ccc            C    GC      gga   a 
  gcccc     cccaa   uaCAUACUUCUU AUAU  CCAUAg   guc g
  |||||     |||||   |||||||||||| ||||  ||||||   |||  
  ugggg     ggguu   AUGUAUGAAGAA UGUA  GGUauu   cgg c
cc     ---uc     ccU            U    -A      --g   c 


Annotation confidence Not enough data
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Genome context
chr19: 4210814-4210912 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-1b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-1b-5p

Accession MIMAT0037615
Description Chrysemys picta cpi-miR-1b-5p mature miRNA
Sequence 22 - CAUACUUCUUCAUAUGCCCAUA - 43
Evidence experimental
Illumina [1]

Mature cpi-miR-1b-3p

Accession MIMAT0037616
Description Chrysemys picta cpi-miR-1b-3p mature miRNA
Sequence 62 - UGGAAUGUUAAGAAGUAUGUAU - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196