miRBase entry: cpi-mir-9-1

Stem-loop cpi-mir-9-1


Accession
MI0029391
Description
Chrysemys picta cpi-mir-9-1 precursor miRNA


Sequence

acuucagggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGAguggugucaauucuucaUAAAGCUAGAUAACCGAAAGUAaaaauaaccccauuacac
......(((((((....((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))...))))))).......

Structure
-acuuca       guug    C               G      u   g 
       gggguug    uuaU UUUGGUUAUCUAGCU UAUGAg ggu u
       |||||||    |||| ||||||||||||||| |||||| |||  
       ccccaau    aAUG AAGCCAAUAGAUCGA AUacuu uua c
cacauua       -aaa    A               A      c   a 


Annotation confidence Not enough data
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Genome context
KK088189.1: 303582-303681 [+]

Database links

Mature cpi-miR-9-5p

Accession MIMAT0037622
Description Chrysemys picta cpi-miR-9-5p mature miRNA
Sequence 21 - UCUUUGGUUAUCUAGCUGUAUGA - 43
Evidence experimental
Illumina [1]

Mature cpi-miR-9-3p

Accession MIMAT0037623
Description Chrysemys picta cpi-miR-9-3p mature miRNA
Sequence 61 - UAAAGCUAGAUAACCGAAAGUA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196