miRBase entry: cpi-mir-9-3

Stem-loop cpi-mir-9-3


Accession
MI0029393
Description
Chrysemys picta cpi-mir-9-3 precursor miRNA


Sequence

agaaggagggcuguuucugUCUUUGGUUAUCUAGCUGUAUGAguguuauuaagccaucaUAAAGCUAGAUAACCGAAAGUAgaaaugacuuccaacccu
....(((((...(((((((.((((((((((((((((.(((((..(((....)))..))))).)))))))))))).)))))))))))..)))))......

Structure
--agaa     gcu       U    -            G     gu   a 
      ggagg   guuucug CUUU GGUUAUCUAGCU UAUGA  guu u
      |||||   ||||||| |||| |||||||||||| |||||  |||  
      ccuuc   uaaagAU GAAA CCAAUAGAUCGA AUacu  cga u
ucccaa     -ag       -    G            A     ac   a 


Annotation confidence Not enough data
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Genome context
KK088241.1: 2631791-2631889 [-]

Database links

Mature cpi-miR-9-5p

Accession MIMAT0037622
Description Chrysemys picta cpi-miR-9-5p mature miRNA
Sequence 20 - UCUUUGGUUAUCUAGCUGUAUGA - 42
Evidence experimental
Illumina [1]

Mature cpi-miR-9-3p

Accession MIMAT0037623
Description Chrysemys picta cpi-miR-9-3p mature miRNA
Sequence 60 - UAAAGCUAGAUAACCGAAAGUA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196