miRBase entry: cpi-mir-15b

Stem-loop cpi-mir-15b

Accession

MI0029399

Description

Chrysemys picta cpi-mir-15b precursor miRNA

Sequence

gggcuuugaggagaugUAGCAGCACAUCAUGGUUUGUAGggacaaggagauaCAGACCAUUCUGGGCUGCCUCAUUaccucaaggaua
...((((((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).))))))))...

Structure

ggg        a    UA     A  UC          Gggac 
   cuuugagg gaug  GCAGC CA  AUGGUUUGUA     a
   |||||||| ||||  ||||| ||  ||||||||||      
   ggaacucc UUAC  CGUCG GU  UACCAGACau     a
aua        a    UC     G  CU          agagg

Annotation confidence Not enough data

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Genome context

KK088187.1: 4725469-4725556 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-15b-5p

Accession	MIMAT0037632
Description	Chrysemys picta cpi-miR-15b-5p mature miRNA
Sequence	17 - UAGCAGCACAUCAUGGUUUGUAG - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-15b-3p

Accession	MIMAT0037633
Description	Chrysemys picta cpi-miR-15b-3p mature miRNA
Sequence	53 - CAGACCAUUCUGGGCUGCCUCAUU - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196