miRBase entry: cpi-mir-19a

Stem-loop cpi-mir-19a


Accession
MI0029404
Description
Chrysemys picta cpi-mir-19a precursor miRNA


Sequence

uagcugcucugcaguccucuguuAGUUUUGCAUAGUUGCACUACAagaagaauguaguUGUGCAAAUCUAUGCAAAACUGaugguggccuguuauugucu
.....((...((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))....))..

Structure
uagcu  -ucu    u  u                 --      ---    ag 
     gc    gcag cc cuguuAGUUUUGCAUAG  UUGCAC   UACA  a
     ||    |||| || |||||||||||||||||  ||||||   ||||  a
     ug    uguc gg gguaGUCAAAACGUAUC  AACGUG   augu  g
---uc  uuau    c  u                 UA      Uug    aa 


Annotation confidence Not enough data
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Genome context
KK083096.1: 1396986-1397085 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-19a-5p

Accession MIMAT0037642
Description Chrysemys picta cpi-miR-19a-5p mature miRNA
Sequence 24 - AGUUUUGCAUAGUUGCACUACA - 45
Evidence experimental
Illumina [1]

Mature cpi-miR-19a-3p

Accession MIMAT0037643
Description Chrysemys picta cpi-miR-19a-3p mature miRNA
Sequence 59 - UGUGCAAAUCUAUGCAAAACUG - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196