miRBase entry: cpi-mir-20a

Stem-loop cpi-mir-20a


Accession
MI0029407
Description
Chrysemys picta cpi-mir-20a precursor miRNA


Sequence

gacagcuccuguaguacUAAAGUGCUUAUAGUGCAGGUAguguucaguaaucuACUGCAUUAUGAGCACUUAAAGuacugcuagcuguagaa
.((((((...((((((((.(((((((((((((((((.(((...........))))))))))))))))))))..)))))))).))))))....

Structure
---g      ccu        -A                 G   uguu 
    acagcu   guaguacU  AAGUGCUUAUAGUGCAG UAg    c
    ||||||   ||||||||  ||||||||||||||||| |||    a
    ugucga   cgucauGA  UUCACGAGUAUUACGUC Auc    g
aaga      --u        AA                 -   uaau 


Annotation confidence Not enough data
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Genome context
KK083096.1: 1396807-1396898 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpi-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-20a-5p

Accession MIMAT0037647
Description Chrysemys picta cpi-miR-20a-5p mature miRNA
Sequence 18 - UAAAGUGCUUAUAGUGCAGGUA - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-20a-3p

Accession MIMAT0037648
Description Chrysemys picta cpi-miR-20a-3p mature miRNA
Sequence 54 - ACUGCAUUAUGAGCACUUAAAG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196