miRBase entry: cpi-mir-21

Stem-loop cpi-mir-21


Accession
MI0029409
Description
Chrysemys picta cpi-mir-21 precursor miRNA


Sequence

cuguaccauccugucggaUAGCUUAUCAGACUGAUGUUGAcuguuggaucucauggcAACAACAGUCGGUAGGCUGUCUgacauuuugguaucuuu
..((((((...((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))...))))))....

Structure
--cu      ucc                A     A     A    ugg 
    guacca   ugucggaUAGCUUAUC GACUG UGUUG cugu   a
    ||||||   |||||||||||||||| ||||| ||||| ||||    
    uauggu   acagUCUGUCGGAUGG CUGAC ACAAc ggua   u
uuuc      uuu                -     A     -    cuc 


Annotation confidence Not enough data
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Genome context
KK088184.1: 632951-633046 [+]

Database links

Mature cpi-miR-21-5p

Accession MIMAT0037651
Description Chrysemys picta cpi-miR-21-5p mature miRNA
Sequence 19 - UAGCUUAUCAGACUGAUGUUGA - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-21-3p

Accession MIMAT0037652
Description Chrysemys picta cpi-miR-21-3p mature miRNA
Sequence 58 - AACAACAGUCGGUAGGCUGUCU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196