miRBase entry: cpi-mir-29a-1

Stem-loop cpi-mir-29a-1


Accession
MI0029420
Description
Chrysemys picta cpi-mir-29a-1 precursor miRNA


Sequence

accccuuuagaggaugACUGAUUUCUUUUGGUGUUCAGAgucaauacuauuuucUAGCACCAUUUGAAAUCGGUUAuagugacuggggaauugcau
.((((.(((....((((((((((((...(((((((.((((...........)))))))))))...))))))))))))..)))..))))........

Structure
-------a    -u   gagg            UUU       C    ucaa 
        cccc  uua    augACUGAUUUC   UGGUGUU AGAg    u
        ||||  |||    ||||||||||||   ||||||| ||||    a
        gggg  agu    uAUUGGCUAAAG   ACCACGA Ucuu    c
uacguuaa    uc   --ga            UUU       -    uuau 


Annotation confidence Not enough data
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Genome context
KK082943.1: 6076377-6076472 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-29a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-29a-5p

Accession MIMAT0037668
Description Chrysemys picta cpi-miR-29a-5p mature miRNA
Sequence 17 - ACUGAUUUCUUUUGGUGUUCAGA - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-29a-3p

Accession MIMAT0037669
Description Chrysemys picta cpi-miR-29a-3p mature miRNA
Sequence 55 - UAGCACCAUUUGAAAUCGGUUA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196