miRBase entry: cpi-mir-29b-1

Stem-loop cpi-mir-29b-1


Accession
MI0029422
Description
Chrysemys picta cpi-mir-29b-1 precursor miRNA

Literature search
1 open access papers mention cpi-mir-29b-1
(8 sentences)

Sequence

cucccucaggaagCUGGUUUCAUAUGGUGGUUUAGAuuuaacuacuccgugucUAGCACCAUUUGAAAUCAGUGuucuuggaggaagaaug
.(((.(((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))).)))......

Structure
-----c   c       -          U      GU      uuaac 
      ucc ucaggaa gCUGGUUUCA AUGGUG  UUAGAu     u
      ||| ||||||| |||||||||| ||||||  ||||||     a
      agg gguucuu UGACUAAAGU UACCAC  GAUcug     c
guaaga   a       G          U      --      ugccu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KK082943.1: 6077555-6077645 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-29b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-29b-5p

Accession MIMAT0037671
Description Chrysemys picta cpi-miR-29b-5p mature miRNA
Sequence 14 - CUGGUUUCAUAUGGUGGUUUAGA - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-29b-3p

Accession MIMAT0037672
Description Chrysemys picta cpi-miR-29b-3p mature miRNA
Sequence 54 - UAGCACCAUUUGAAAUCAGUG - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196