miRBase entry: cpi-mir-30b

Stem-loop cpi-mir-30b


Accession
MI0029425
Description
Chrysemys picta cpi-mir-30b precursor miRNA


Sequence

uacugauuuuuaguucaUGUAAACAUCCUACACUCAGCUauaaaacauagaacggCUGGGAGGUGGAUGUUUACUUCaacugacuuggaaa
..((((...((((((...((((((((((.((.(((((((..............)))))))..))))))))))))...)))))).))))...

Structure
-ua    uuu      caU          U  -A       auaaaa 
   cuga   uuaguu   GUAAACAUCC AC  CUCAGCU      c
   ||||   ||||||   |||||||||| ||  |||||||       
   gguu   agucaa   CAUUUGUAGG UG  GGGUCgg      a
aaa    --c      CUU          -  GA       caagau 


Annotation confidence Not enough data
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Genome context
KK088237.1: 13389201-13389291 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-30b-5p

Accession MIMAT0037676
Description Chrysemys picta cpi-miR-30b-5p mature miRNA
Sequence 18 - UGUAAACAUCCUACACUCAGCU - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-30b-3p

Accession MIMAT0037677
Description Chrysemys picta cpi-miR-30b-3p mature miRNA
Sequence 56 - CUGGGAGGUGGAUGUUUACUUC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196