miRBase entry: cpi-mir-31

Stem-loop cpi-mir-31


Accession
MI0029430
Description
Chrysemys picta cpi-mir-31 precursor miRNA


Sequence

guuauuaaucagacuuugaggggAGGCAAGAUGUUGGCAUAGCUGuugaccuaauaaccUGCUAUGCCAACAUAUUGUCAUCuuucucgucuauuugca
.....(((..((((...((((((.(((((.(((((((((((((.((((......))))..))))))))))))).))))).))))))..))))..)))..

Structure
guuau   uc    uuu      A     G             -U    ac 
     uaa  agac   gagggg GGCAA AUGUUGGCAUAGC  Guug  c
     |||  ||||   |||||| ||||| |||||||||||||  ||||   
     guu  ucug   cuuuCU CUGUU UACAACCGUAUCG  caau  u
---ac   ua    -cu      A     A             Uc    aa 


Annotation confidence Not enough data
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Genome context
KK082933.1: 116624-116722 [-]

Database links

Mature cpi-miR-31-5p

Accession MIMAT0037685
Description Chrysemys picta cpi-miR-31-5p mature miRNA
Sequence 24 - AGGCAAGAUGUUGGCAUAGCUG - 45
Evidence experimental
Illumina [1]

Mature cpi-miR-31-3p

Accession MIMAT0037686
Description Chrysemys picta cpi-miR-31-3p mature miRNA
Sequence 60 - UGCUAUGCCAACAUAUUGUCAUC - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196