miRBase entry: cpi-mir-34a

Stem-loop cpi-mir-34a


Accession
MI0029434
Description
Chrysemys picta cpi-mir-34a precursor miRNA


Sequence

gugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUugugagcaauaaucaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcugcacau
((((((((((((..(((((((((((.(((((((((..(((.......))).....)))))))))))).))))))))..))))))))).)))..

Structure
--   -         uU        -   A         ---ug   gc 
  gug aguguuucu  GGCAGUGU CUU GCUGGUUGU     uga  a
  ||| |||||||||  |||||||| ||| |||||||||     |||  a
  cac ucgugaagA  CCGUCAUA GAA CGACUAAcg     acu  u
ua   g         UC        U   -         aagga   aa 


Annotation confidence Not enough data
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Genome context
chr24: 6970112-6970204 [+]

Database links

Mature cpi-miR-34a-5p

Accession MIMAT0037692
Description Chrysemys picta cpi-miR-34a-5p mature miRNA
Sequence 14 - UGGCAGUGUCUUAGCUGGUUGU - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-34a-3p

Accession MIMAT0037693
Description Chrysemys picta cpi-miR-34a-3p mature miRNA
Sequence 58 - AAUCAGCAAGUAUACUGCCCUA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196