miRBase entry: cpi-mir-99a

Stem-loop cpi-mir-99a


Accession
MI0029444
Description
Chrysemys picta cpi-mir-99a precursor miRNA


Sequence

uggugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGguaaaguauacugcaCAAGCUCGCUUCUAUGGGUCUGugucacucuggugaucu
.(((((((..(((((((.(((((((((..(((.((((((.............)))))).)))..))))))))).)))))))...)))).))).

Structure
u   -    -au       A         UC   U      guaaa 
 ggu gcca   uggcaua ACCCGUAGA  CGA CUUGUG     g
 ||| ||||   ||||||| |||||||||  ||| ||||||     u
 cua uggu   acuguGU UGGGUAUCU  GCU GAACac     a
u   g    cuc       C         UC   C      gucau 


Annotation confidence Not enough data
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Genome context
KK088228.1: 9002704-9002796 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-99a-5p

Accession MIMAT0037710
Description Chrysemys picta cpi-miR-99a-5p mature miRNA
Sequence 18 - AACCCGUAGAUCCGAUCUUGUG - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-99a-3p

Accession MIMAT0037711
Description Chrysemys picta cpi-miR-99a-3p mature miRNA
Sequence 55 - CAAGCUCGCUUCUAUGGGUCUG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196