miRBase entry: cpi-mir-101-1

Stem-loop cpi-mir-101-1


Accession
MI0029447
Description
Chrysemys picta cpi-mir-101-1 precursor miRNA


Sequence

acugacaggcugcccuggcUCAGUUAUCACAGUGCUGAUGCUgucuauucuaaaggUACAGUACUGUGAUAACUGAAGgauggcagccaucuuagc
.((((..(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))...)))).

Structure
a    -ca       cuggc                  A    gucua 
 cuga   ggcugcc     UCAGUUAUCACAGUGCUG UGCU     u
 ||||   |||||||     |||||||||||||||||| ||||      
 gauu   ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
c    cua       uagGA                  -    aaauc 


Annotation confidence Not enough data
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Genome context
chr8: 38837677-38837772 [-]

Database links

Mature cpi-miR-101-5p

Accession MIMAT0037716
Description Chrysemys picta cpi-miR-101-5p mature miRNA
Sequence 20 - UCAGUUAUCACAGUGCUGAUGCU - 42
Evidence experimental
Illumina [1]

Mature cpi-miR-101-3p

Accession MIMAT0037717
Description Chrysemys picta cpi-miR-101-3p mature miRNA
Sequence 57 - UACAGUACUGUGAUAACUGAAG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196