miRBase entry: cpi-mir-128-1

Stem-loop cpi-mir-128-1


Accession
MI0029463
Description
Chrysemys picta cpi-mir-128-1 precursor miRNA


Sequence

uugugagcuguuggauuCGGGGCCGUAACACUGUCUGAGAggguuacauuucUCACAGUGAACCGGUCUCUUUuucagcugcuuccucg
....((((.((((((...(((((((...((((((..((((((......))))))))))))...)))))))...)))))).)))).....

Structure
-uugu    u      uuC       UAA      CU      gu 
     gagc guugga   GGGGCCG   CACUGU  GAGAgg  u
     |||| ||||||   |||||||   ||||||  ||||||   
     uucg cgacuu   CUCUGGC   GUGACA  CUcuuu  a
gcucc    u      UUU       CAA      --      ac 


Annotation confidence Not enough data
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Genome context
chr4: 4504710-4504798 [+]

Database links

Mature cpi-miR-128-5p

Accession MIMAT0037735
Description Chrysemys picta cpi-miR-128-5p mature miRNA
Sequence 18 - CGGGGCCGUAACACUGUCUGAGA - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-128-3p

Accession MIMAT0037736
Description Chrysemys picta cpi-miR-128-3p mature miRNA
Sequence 53 - UCACAGUGAACCGGUCUCUUU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196