miRBase entry: cpi-mir-133c

Stem-loop cpi-mir-133c


Accession
MI0029475
Description
Chrysemys picta cpi-mir-133c precursor miRNA


Sequence

cuggagagagugugucccuggggcugguaaaaaggaaccagaucaacuuggaacuggaUUUGGUCCCCUUCAACCAGCUGcaguggcgcauacgccagcc
((((.(...(((((((.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).))))))).).))))..

Structure
--    a aga       c   g       aa  a  a        aacuu 
  cugg g   guguguc cug ggcuggu  aa gg accagauc     g
  |||| |   ||||||| ||| |||||||  || || ||||||||      
  gacc c   uacgcgg gac UCGACCA  UU CC UGGUUUag     g
cc    g --a       u   G       AC  C  C        gucaa 


Annotation confidence Not enough data
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Genome context
chr19: 4211024-4211123 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-133c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-133c-3p

Accession MIMAT0037753
Description Chrysemys picta cpi-miR-133c-3p mature miRNA
Sequence 59 - UUUGGUCCCCUUCAACCAGCUG - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196