miRBase entry: cpi-mir-138

Stem-loop cpi-mir-138


Accession
MI0029481
Description
Chrysemys picta cpi-mir-138 precursor miRNA


Sequence

gguauuguugcugcAGCUGGUGUUGUGAAUCAGGCcgacaacaagcucauccuacuauccgGCUAUUUCACUACACCAGGGUugcaucauaccac
(((((.(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).))))))..

Structure
--     u u   u  AG       U     UCA     acaacaagcu 
  gguau g ugc gc  CUGGUGU GUGAA   GGCcg          c
  ||||| | ||| ||  ||||||| |||||   |||||           
  ccaua c acg UG  GACCACA CACUU   UCGgc          a
ca     - u   u  -G       U     -UA     cuaucauccu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr15: 1379883-1379977 [-]

Database links

Mature cpi-miR-138-5p

Accession MIMAT0037760
Description Chrysemys picta cpi-miR-138-5p mature miRNA
Sequence 15 - AGCUGGUGUUGUGAAUCAGGC - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-138-3p

Accession MIMAT0037761
Description Chrysemys picta cpi-miR-138-3p mature miRNA
Sequence 62 - GCUAUUUCACUACACCAGGGU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196