miRBase entry: cpi-mir-143

Stem-loop cpi-mir-143


Accession
MI0029486
Description
Chrysemys picta cpi-mir-143 precursor miRNA


Sequence

agcuccgucaaugucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaguugugagucUGAGAUGAAGCACUGUAGCUCgggaagggaggaacugugca
......((((...((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..))))))...)).)).

Structure
agcucc  -  aug      ag   a  G         G      U  -   g 
      gu ca   ucuccc  ccc aG UGCAGUGCU CAUCUC GG uca u
      || ||   ||||||  ||| || ||||||||| |||||| || |||  
      cg gu   ggaggg  ggg UC AUGUCACGA GUAGAG cu agu u
-----a  u  caa      aa   C  G         A      U  g   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KK088198.1: 3605724-3605824 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-143-5p

Accession MIMAT0037768
Description Chrysemys picta cpi-miR-143-5p mature miRNA
Sequence 27 - GGUGCAGUGCUGCAUCUCUGG - 47
Evidence experimental
Illumina [1]

Mature cpi-miR-143-3p

Accession MIMAT0037769
Description Chrysemys picta cpi-miR-143-3p mature miRNA
Sequence 61 - UGAGAUGAAGCACUGUAGCUC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196