miRBase entry: cpi-mir-152

Stem-loop cpi-mir-152


Accession
MI0029495
Description
Chrysemys picta cpi-mir-152 precursor miRNA


Sequence

guccucucggcccAGGUUCUGUGGUACACUUGGACUuggacucuggagcagUCAGUGCAUGACAGAACUUGGguuuggauggacccu
(((((((.((((((((((((((.((.((((..((((.(..........))))))))).)).)))))))))))))).))).))))...

Structure
---    -   c              G  A    UG    u gacu 
   gucc ucu ggcccAGGUUCUGU GU CACU  GACU g    c
   |||| ||| |||||||||||||| || ||||  |||| |     
   cagg agg uugGGUUCAAGACA UA GUGA  CUga c    u
ucc    u   u              G  C    --    - gagg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KK088207.1: 3033148-3033234 [+]

Database links

Mature cpi-miR-152-5p

Accession MIMAT0037785
Description Chrysemys picta cpi-miR-152-5p mature miRNA
Sequence 14 - AGGUUCUGUGGUACACUUGGACU - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-152-3p

Accession MIMAT0037786
Description Chrysemys picta cpi-miR-152-3p mature miRNA
Sequence 52 - UCAGUGCAUGACAGAACUUGG - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196