miRBase entry: cpi-mir-181a-1

Stem-loop cpi-mir-181a-1


Accession
MI0029500
Description
Chrysemys picta cpi-mir-181a-1 precursor miRNA


Sequence

guugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuaaagugaaaACCAUCGACCGUUGAUUGUACccuccagcuaaccauca
((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).))).....

Structure
-----   -   uc  u A   U      CU       A    ggaau 
     guu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
     ||| |||  || | ||| ||||||  ||||||| ||||     a
     caa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
acuac   u   cc  c A   U      --       -    aguga 


Annotation confidence Not enough data
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Genome context
KK088227.1: 2809170-2809259 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-181a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-181a-5p

Accession MIMAT0037791
Description Chrysemys picta cpi-miR-181a-5p mature miRNA
Sequence 13 - AACAUUCAACGCUGUCGGUGAGU - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-181a-3p

Accession MIMAT0037792
Description Chrysemys picta cpi-miR-181a-3p mature miRNA
Sequence 53 - ACCAUCGACCGUUGAUUGUAC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196