miRBase entry: cpi-mir-181a-2

Stem-loop cpi-mir-181a-2


Accession
MI0029501
Description
Chrysemys picta cpi-mir-181a-2 precursor miRNA


Sequence

gauagcuucagugAACAUUCAACGCUGUCGGUGAGUuugagaauuagaaaaaACCAUCGACCGUUGACUGUACCuugagguauaucaca
(((((((((((.(.(((.((((((..(((((((.((((............))))))))))))))))).))).).))))))).))))...

Structure
---    -       u A   U      CU       A    gagaa 
   gaua gcuucag g ACA UCAACG  GUCGGUG GUuu     u
   |||| ||||||| | ||| ||||||  ||||||| ||||      
   cuau uggaguu C UGU AGUUGC  CAGCUAC CAaa     u
aca    a       C A   C      --       -    aaaga 


Annotation confidence Not enough data
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Genome context
KK083017.1: 722310-722398 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-181a-5p

Accession MIMAT0037791
Description Chrysemys picta cpi-miR-181a-5p mature miRNA
Sequence 14 - AACAUUCAACGCUGUCGGUGAGU - 36
Evidence experimental
Illumina [1]

Mature cpi-miR-181a-2-3p

Accession MIMAT0037793
Description Chrysemys picta cpi-miR-181a-2-3p mature miRNA
Sequence 53 - ACCAUCGACCGUUGACUGUACC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196