miRBase entry: cpi-mir-181b-3

Stem-loop cpi-mir-181b-3

Accession

MI0029505

Description

Chrysemys picta cpi-mir-181b-3 precursor miRNA

Sequence

cgaaaagucacaaucAACAUUCAUUGCUGUCGGUGGGUUguguuguugaaggaaaaaCUCACUGAUCAAUGAAUGCAacugugauuggaaugga
.....(((((((.....(((((((((..(((((((((((................))))))))))))))))))))....)))))))........

Structure

---cgaaa       aucAA         CU           guguugu 
        agucaca     CAUUCAUUG  GUCGGUGGGUU       u
        |||||||     |||||||||  |||||||||||        
        uuagugu     GUAAGUAAC  UAGUCACUCaa       g
agguaagg       -caAC         --           aaaggaa

Annotation confidence Not enough data

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Genome context

KK088216.1: 221988-222081 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-181b-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-181b-5p

Accession	MIMAT0037795
Description	Chrysemys picta cpi-miR-181b-5p mature miRNA
Sequence	16 - AACAUUCAUUGCUGUCGGUGGGUU - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-181b-3p

Accession	MIMAT0037797
Description	Chrysemys picta cpi-miR-181b-3p mature miRNA
Sequence	58 - CUCACUGAUCAAUGAAUGCA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196