miRBase entry: cpi-mir-194-1

Stem-loop cpi-mir-194-1


Accession
MI0029516
Description
Chrysemys picta cpi-mir-194-1 precursor miRNA


Sequence

caguguuaucagaUGUAACAGCAACUCCAUGUGGAcuacacugacuuCCAGUGGAGAUGCUGUUACUUuugauaucuacugac
(((((.(((((((.(((((((((.((((((.((((...........)))))))))).))))))))).)))))))..)))))..

Structure
--     -u       U         A      G    cuac 
  cagug  uaucaga GUAACAGCA CUCCAU UGGA    a
  |||||  ||||||| ||||||||| |||||| ||||    c
  gucau  auaguuU CAUUGUCGU GAGGUG ACCu    u
ca     cu       U         A      -    ucag 


Annotation confidence Not enough data
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Genome context
KK088190.1: 1310613-1310695 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-194-5p

Accession MIMAT0037812
Description Chrysemys picta cpi-miR-194-5p mature miRNA
Sequence 14 - UGUAACAGCAACUCCAUGUGGA - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-194-3p

Accession MIMAT0037813
Description Chrysemys picta cpi-miR-194-3p mature miRNA
Sequence 48 - CCAGUGGAGAUGCUGUUACUU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196