miRBase entry: cpi-mir-210

Stem-loop cpi-mir-210


Accession
MI0029535
Description
Chrysemys picta cpi-mir-210 precursor miRNA


Sequence

cagaagcuggugAGCCACUGACUAACGCACAUUGugcuguuaaagaauccaCUGUGCGUGUGACAGCGGCUAAccagcuuuucggcc
.((((((((((.((((.(((.(..(((((((.((..((.....))....)).)))))))..).))).)))).)))))))))).....

Structure
----c          g    A   A UA       U  --ug  g 
     agaagcuggu AGCC CUG C  ACGCACA UG    cu u
     |||||||||| |||| ||| |  ||||||| ||    || u
     uuuucgaccA UCGG GAC G  UGCGUGU ac    ga a
ccggc          A    C   A UG       C  cuaa  a 


Annotation confidence Not enough data
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Genome context
KK083161.1: 870670-870756 [+]

Database links

Mature cpi-miR-210-5p

Accession MIMAT0037836
Description Chrysemys picta cpi-miR-210-5p mature miRNA
Sequence 13 - AGCCACUGACUAACGCACAUUG - 34
Evidence experimental
Illumina [1]

Mature cpi-miR-210-3p

Accession MIMAT0037837
Description Chrysemys picta cpi-miR-210-3p mature miRNA
Sequence 52 - CUGUGCGUGUGACAGCGGCUAA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196