miRBase entry: cpi-mir-216a

Stem-loop cpi-mir-216a


Accession
MI0029539
Description
Chrysemys picta cpi-mir-216a precursor miRNA


Sequence

ggauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGAgcaauuaauacauucucucacagugguaucugggauuaugcuaaacacagcaauuuc
.....((((((..(((((.(((((((((.((.((.(((((((.(((......)))..))))))))).)).))))))))).))))).))))))......

Structure
-ggaug      aa     u         C  G  A       -c   ua 
      gcugug  uuggc UAAUCUCAG UG CA CUGUGAg  aau  a
      ||||||  ||||| ||||||||| || || |||||||  |||   
      cgacac  aaucg auuaggguc au gu gacacuc  uua  u
cuuuaa      -a     u         u  g  -       uc   ca 


Annotation confidence Not enough data
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Genome context
AHGY02151174.1: 349-446 [-]

Database links

Mature cpi-miR-216a-5p

Accession MIMAT0037843
Description Chrysemys picta cpi-miR-216a-5p mature miRNA
Sequence 20 - UAAUCUCAGCUGGCAACUGUGA - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196