miRBase entry: cpi-mir-301a

Stem-loop cpi-mir-301a


Accession
MI0029550
Description
Chrysemys picta cpi-mir-301a precursor miRNA


Sequence

ugcugcuaacgaaugcucugacuuuauugcacuacuguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCaucugaaagcagag
..(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))..

Structure
ug     aa  a     c    ---u          a  -  acu 
  cugcu  cg augcu ugac    uuauugcacu cu gu   u
  |||||  || ||||| ||||    |||||||||| || ||    
  gacga  gu uaCGA ACUG    GAUAACGUGA ga cg   u
ga     aa  c     A    UUAU          C  u  aca 


Annotation confidence Not enough data
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Genome context
KK088184.1: 245711-245798 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-301a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-301a-3p

Accession MIMAT0037858
Description Chrysemys picta cpi-miR-301a-3p mature miRNA
Sequence 52 - CAGUGCAAUAGUAUUGUCAAAGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196