miRBase entry: cpi-mir-302a

Stem-loop cpi-mir-302a


Accession
MI0029552
Description
Chrysemys picta cpi-mir-302a precursor miRNA


Sequence

agcuuaaaggacccccacuacuuuaauguggaaguacuugcuuugcuccugauaaagUAAGUGCUUCCAUGUUUUAGUGauggugaaaccug
.......(((...((((.((((..((((((((((((((((((((((....).)))))))))))))))))))))..)))).))).)...))).

Structure
agcuuaa   acc -   c    uu                     - u 
       agg   c cca uacu  aauguggaaguacuugcuuug c c
       |||   | ||| ||||  ||||||||||||||||||||| |  
       ucc   g ggu GUGA  UUGUACCUUCGUGAAUgaaau g c
------g   aaa u   a    UU                     a u 


Annotation confidence Not enough data
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Genome context
KK082956.1: 5875601-5875692 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cpi-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-302a-3p

Accession MIMAT0037860
Description Chrysemys picta cpi-miR-302a-3p mature miRNA
Sequence 58 - UAAGUGCUUCCAUGUUUUAGUG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196