miRBase entry: cpi-mir-449a

Stem-loop cpi-mir-449a


Accession
MI0029566
Description
Chrysemys picta cpi-mir-449a precursor miRNA


Sequence

gugugugcuaggaAGGCAGUGUAUUGUUAGCUGGuugaaaaucugacagCAGCUAACCUACAUCUGCUAUCuuauugcacauacua
(((((((((((((.(((((((((..((((((((.(((.........))))))))))).)))).))))).)))))..))))))))..

Structure
--        --     A     -    UU        G   aaa 
  gugugugc  uagga GGCAG UGUA  GUUAGCUG uug   a
  ||||||||  ||||| ||||| ||||  |||||||| |||   u
  cauacacg  auuCU UCGUC ACAU  CAAUCGAC gac   c
au        uu     A     U    -C        -   agu 


Annotation confidence Not enough data
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Genome context
KK082967.1: 566511-566596 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cpi-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-449a-5p

Accession MIMAT0037878
Description Chrysemys picta cpi-miR-449a-5p mature miRNA
Sequence 14 - AGGCAGUGUAUUGUUAGCUGG - 34
Evidence experimental
Illumina [1]

Mature cpi-miR-449a-3p

Accession MIMAT0037879
Description Chrysemys picta cpi-miR-449a-3p mature miRNA
Sequence 50 - CAGCUAACCUACAUCUGCUAUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196