miRBase entry: cpi-mir-449b

Stem-loop cpi-mir-449b


Accession
MI0029567
Description
Chrysemys picta cpi-mir-449b precursor miRNA


Sequence

ugugucugguAGGCAGUGUACUGUUAGCUGGCUgcuuugugugaaucuagcagucucuacuacacugucaccugcugcagg
((((.(.(((.(((((((((..((.((..(((((((..((....))..))))))).)))))))))))))))).).))))..

Structure
--    u u   A         CU  U  CU       uu  g 
  ugug c ggu GGCAGUGUA  GU AG  GGCUgcu  gu u
  |||| | ||| |||||||||  || ||  |||||||  ||  
  acgu g cca cugucacau  ca uc  cugacga  ua g
gg    c u   -         --  -  -u       uc  a 


Annotation confidence Not enough data
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Genome context
KK082967.1: 566349-566429 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cpi-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-449b-5p

Accession MIMAT0037880
Description Chrysemys picta cpi-miR-449b-5p mature miRNA
Sequence 11 - AGGCAGUGUACUGUUAGCUGGCU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196