miRBase entry: cpi-mir-451

Stem-loop cpi-mir-451


Accession
MI0029570
Description
Chrysemys picta cpi-mir-451 precursor miRNA


Sequence

agcugagcccauggggcgucaaugAAACCGUUACCAUUACUGACUUUAGUAAUGGUAACGGUUCUacugccgccccagcauccggccagcga
.((((.(((..(((((((.((.((.(((((((((((((((((....))))))))))))))))).)).)).)))))))......)))))))..

Structure
-a    a   ----ca       u  a  A                 A 
  gcug gcc      uggggcg ca ug AACCGUUACCAUUACUG C
  |||| |||      ||||||| || || |||||||||||||||||  
  cgac cgg      accccgc gu aU UUGGCAAUGGUAAUGAU U
ag    -   ccuacg       c  c  C                 U 


Annotation confidence Not enough data
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Genome context
KK082936.1: 6573776-6573867 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-451
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-451-5p

Accession MIMAT0037883
Description Chrysemys picta cpi-miR-451-5p mature miRNA
Sequence 25 - AAACCGUUACCAUUACUGACUU - 46
Evidence experimental
Illumina [1]

Mature cpi-miR-451-3p

Accession MIMAT0037884
Description Chrysemys picta cpi-miR-451-3p mature miRNA
Sequence 46 - UUAGUAAUGGUAACGGUUCU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196