miRBase entry: cpi-mir-499

Stem-loop cpi-mir-499


Accession
MI0029580
Description
Chrysemys picta cpi-mir-499 precursor miRNA


Sequence

uugggagagcggcagUUAAGACUUGCAGUGAUGUUUAgauaauguauuacaugAACAUCACUUUAAGUCUGUGCUaccucucuccucacucuggac
..(((((((.((.(((..(((((((.(((((((((((..(((....)))..))))))))))).)))))))..))).)).)))))))..........

Structure
--------uu       c  c   UA       C           ga   u 
          gggagag gg agU  AGACUUG AGUGAUGUUUA  uaa g
          ||||||| || |||  ||||||| |||||||||||  |||  
          uccucuc cc UCG  UCUGAAU UCACUACAAgu  auu u
caggucucac       u  a   UG       U           ac   a 


Annotation confidence Not enough data
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Genome context
KK082922.1: 10342605-10342700 [-]

Database links

Mature cpi-miR-499-5p

Accession MIMAT0037901
Description Chrysemys picta cpi-miR-499-5p mature miRNA
Sequence 16 - UUAAGACUUGCAGUGAUGUUUA - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-499-3p

Accession MIMAT0037902
Description Chrysemys picta cpi-miR-499-3p mature miRNA
Sequence 54 - AACAUCACUUUAAGUCUGUGCU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196