Stem-loop cpi-mir-1397

Accession

MI0029590

Description

Chrysemys picta cpi-mir-1397 precursor miRNA

Sequence

ugcgaugugugcauUGCAUUGCGACGGGUUACAUCAcuggucguaacaugauguaacccaacgcagcaugauguaagcgucgug
.(((((((.((((((...(((((..(((((((((((.((.......)))))))))))))..)))))...)))))).))))))).

Structure

u       g      GCA     AC           c  gu 
 gcgaugu ugcauU   UUGCG  GGGUUACAUCA ug  c
 ||||||| ||||||   |||||  ||||||||||| ||  g
 ugcugcg auguag   gacgc  cccaauguagu ac  u
g       a      uac     aa           -  aa 

Annotation confidence Not enough data

Genome context

KK082916.1: 10384958-10385041 [+]

Mature cpi-miR-1397-5p

• Accession: MIMAT0037915
• Description: Chrysemys picta cpi-miR-1397-5p mature miRNA
• Sequence: 15 - UGCAUUGCGACGGGUUACAUCA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196