miRBase entry: cpi-mir-1677c

Stem-loop cpi-mir-1677c


Accession
MI0029596
Description
Chrysemys picta cpi-mir-1677c precursor miRNA


Sequence

ccucuucaaggccuaaUCCAGAGCCCAUUGAAGUCAGUgggaaucuuucuAUUGACUUCAGUGGGCUUUGGAucaggccuugggagcu
.((((.((((((((.(((((((((((((((((((((((((((....))))))))))))))))))))))))))).))))))))))))..

Structure
-c    u        a                           a 
  cucu caaggccu aUCCAGAGCCCAUUGAAGUCAGUggga u
  |||| |||||||| |||||||||||||||||||||||||||  
  gagg guuccgga uAGGUUUCGGGUGACUUCAGUUAucuu c
uc    -        c                           u 


Annotation confidence Not enough data
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Genome context
chr6: 7236705-7236792 [-]

Database links

Mature cpi-miR-1677c-5p

Accession MIMAT0037924
Description Chrysemys picta cpi-miR-1677c-5p mature miRNA
Sequence 17 - UCCAGAGCCCAUUGAAGUCAGU - 38
Evidence experimental
Illumina [1]

Mature cpi-miR-1677c-3p

Accession MIMAT0037925
Description Chrysemys picta cpi-miR-1677c-3p mature miRNA
Sequence 51 - AUUGACUUCAGUGGGCUUUGGA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196